This is a new, improved gene prediction/evidence set for Daphnia
pulex, in a beta release, for those interested. Your comments to
improve these are desired. -- Don Gilbert, gilbertd at indiana edu.
daphnia_genes2010_beta3 : Daphnia pulex Gene Set 2.0 beta3, 2010 April
see daphnia_genes2010_beta3.readme.txt
daphnia_genes2010_tilex/ : Tile expression analysis for Genes 2.0
older-predictions/
dpulex_aug26_mix14_beta2 : Daphnia pulex Gene Set 2.0 beta2, 2010 March
dpulex_augustus19.gff,aa : protein coding gene predictions/calls derived
from Augustus+ for Daphnia pulex using (a) model trained on Daphnia pulex
EST/cDNA (PASA), (b) Transcriptionally active regions (TARs) from genome tile
array. TAR data guided individual predictions. Some will be outside tar regions,
some matching. The mRNA attribute pct_evd= provides percentage of gene supported
by TAR data.
dpulex-augmap19-nojgigene.esum : for augmap genes outside of prior predictions,
homology check with blast NCBI-Nr protein matches
dpulex-tar-all.gff.gz : TAR combined data (3 groups: fem,male,metal, 3 levels)
dpulex_augustus19.aa.gz : predicted proteins
dpulex_augustus19.gff.gz : predicted features
Don Gilbert, 2008 .. 2010