This is a set of bacterial genes included in the Daphnia pulex
initial draft assembly.
dpulex_jgi060905_possible_bacterial.txt : list of 3889 scaffolds that are likely bacterial origin.
A few of these also have possible eukaryote genes, but most appear bacterial only.
Note that these scaffolds remain in the full genome assembly fasta here (../genome_assembly/)
A smaller set of bacterial scaffolds (700) were removed prior to assembly. Find in
dpulex1_gnomon_bacterial_genes.gff.gz : Gnomon predicted 3622 genes from bacterial scaffolds,
flagged by Gmonon as bacterial in origin. A subset (~ 10%) include Dbxref and protein_hit
information. There are no scaffolds outside the dpulex_jgi060905_possible_bacterial list.
dpulex1_gnomon_bacterial_genes.aa.fa.gz : protein translation of these bacterial genes
dpulex1_gnomon_bacterial_genes.mrna.fa.gz: transcript predictions of these bacterial genes