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Index of /release1/dpulex_jgi060905/genome-assembly

      Name                                    Last modified       Size  Description

[DIR] Parent Directory 09-Apr-2019 09:22 - [TXT] dpulex_jgi060905.fa.count 23-Sep-2006 17:52 387k 2006.09 assembly annotations, EST and data [TXT] dpulex_jgi060905.fa.gapcount 23-Sep-2006 17:53 1k 2006.09 assembly annotations, EST and data [   ] dpulex_jgi060905.fa.gz 23-Sep-2006 17:33 50.3M 2006.09 assembly annotations, EST and data [TXT] dpulex_jgi060905.info 23-Sep-2006 17:04 1k 2006.09 assembly annotations, EST and data [   ] dpulex_jgi060905.repeatmasked.fa.gz 10-Apr-2007 16:48 51.4M 2006.09 assembly annotations, EST and data [   ] dpulex_jgi060905_evenline.fa.gz 15-Aug-2007 17:11 50.8M 2006.09 assembly annotations, EST and data [TXT] dpulex_jgi060905_possible_bacterial.txt 10-Jul-2007 15:01 100k 2006.09 assembly annotations, EST and data


Daphnia pulex genome assembly sequence

dpulex_jgi060905.fa.gz   is JGI genome assembly release 1 fasta for Daphnia pulex (2006-09-05)
dpulex_jgi060905.fa.gapcount counts the gaps (JKent faGapsizes) in histogram form
dpulex_jgi060905.fa.count    counts the bases and gaps of each scaffold
dpulex_jgi060905.repeatmasked.fa.gz  is repeat-soft-masked (repeats are lower case, not N)
dpulex_jgi060905_evenline.fa.gz  is reformat of dpulex_jgi060905.fa.gz to ensure each line
  is formatted at same length (50 or 60 bases) which some software requires.

dpulex_jgi060905_possible_bacterial.txt  list of scaffolds with bacterial not eukaryote alignment,
                        should be left out of most analyses