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PASA EST assemblies

PASA EST assemblies

PASA, Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.

The pasa_daphj set has EST assemblies with the official Daphnia pulex genes (JGI_V11).
The pasa_daphc set has EST assemblies (same) with the NCBI Gnomon genes.

Statistics & Status reports for PASA EST assemblies

Daphnia pulex pasa_daphj (JGI_V11)
Daphnia pulex pasa_daphc (Gnomon)
      Name                    Last modified       Size  Description

[DIR] Parent Directory 09-Apr-2019 09:22 - [DIR] pasa_daphc/ 28-Jan-2010 13:01 - [DIR] pasa_daphj/ 26-Jul-2010 12:42 -


The pasa_daphj set has EST assemblies with the official Daphnia pulex genes (JGI_V11).
The pasa_daphc set has EST assemblies (same) with the NCBI Gnomon genes.